PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225116.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 497aa    MW: 55073.7 Da    PI: 5.3246
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225116.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55e-18193287193
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+l++sdv+++gr+vlpkk aee+  +++ +e+++l+++d  s ++W +k++y  ++ks++y+l+ ++ +Fvk+n+L++gD + +   +++++
  XP_008225116.1 193 FKKELKNSDVGSLGRIVLPKKEAEENlpMLSDKEGIQLMIRDvYSDQEWGLKYKYwsNNKSRMYLLE-NTGDFVKQNKLEVGDCICLL--EDEDK 284
                     89**************************77777899******8888*******99855555556555.***************98877..34666 PP

                     ..E CS
              B3  91 elv 93 
                     +l+
  XP_008225116.1 285 NLY 287
                     555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-25188288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-20192288IPR015300DNA-binding pseudobarrel domain
CDDcd100174.21E-21192289No hitNo description
PfamPF023623.4E-14193288IPR003340B3 DNA binding domain
SMARTSM010194.7E-17193292IPR003340B3 DNA binding domain
PROSITE profilePS5086310.362193294IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MDNFHPPSIP STSTITSAPQ EQHSQLSICE PMSCSPSTTC GPSTTQYYCY PAQYLAPNPG  60
LQFQYSYPYQ QAGLPMYPFL VGGQPNVVVS TEQDSLARSG WTLDALVSKA ARKERRMARQ  120
RSLSLSRNNP NAAASSESSS PSSRRHAPFP WNEDDDRGSM STSSSGAGAD MQNINKHLYT  180
FCTPDNKKLR VMFKKELKNS DVGSLGRIVL PKKEAEENLP MLSDKEGIQL MIRDVYSDQE  240
WGLKYKYWSN NKSRMYLLEN TGDFVKQNKL EVGDCICLLE DEDKNLYIST ETRAGSIHAK  300
PPSHINNNNN NKTTNHKANN SNSHTTTEGN TPDSNLNYAD ANTNTNAKSY SNNHNATADI  360
PTPSAYTYVA RDEEDASSSS LALLVQQLQK EQEANTIIAL SMTCASSPHI QCEEANDATG  420
HIKTSMQPST LAGVEPAPSP SPSQRRAMTR MANDYQFETD DCYKGLGTLP EVDRYKYCDD  480
FCLFDYNGSI TTDDDKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-1119230313128DNA-binding protein RAV1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225116.10.0PREDICTED: B3 domain-containing transcription factor LEC2
TrEMBLM5WK581e-169M5WK58_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123482127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.19e-48B3 family protein